Papers is an application to help you find, organise, read, and search all those PDFs that you accumulate during research. It is written by two nerds—sorry, scientists—in the Netherlands (and now UK), and won an Apple Design Award in 2007.
I downloaded the demo to help me with a biochem assignment. So far it only searches PubMed, but that’s been enough for me.
And the verdict is: it’s sexy. Sexy enough for me to pay for.
Yeah.
“Great, I found the article I was looking for! But wait, what’s this? I can only see the abstract? Oh yeah, I forgot to log into the proxy.”
If this happens to you as often as it does to me, you might be interested in using this bookmarklet: Proxy it. Just drag that link to your bookmark bar. When you click it, the page you’re on will reload through the proxy.
Summary: Attached is a pure Ruby implementation of the AS66 algorithm (Hill 1973), ported from the Fortran code available here. It estimates the integral of the normal distribution, defaulting to the area under the right tail.
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Summary: Attached is a diff that allows Bio::FlatFileIndex to access BDB flatfile databases created by BioPerl’s Bio::DB::Flat. I have not changed the way BioRuby creates its databases, so this likely breaks access to BioRuby-created flatfile indices.
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